Heazlewood JL, Durek P, Hummel J, Selbig J, Weckwerth W, Walther D, Schulze WX. (2007)
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor.
Nucleic Acid Res. doi:10.1093/nar/gkm812
Hummel J, Niemann M, Wienkoop S, Schulze W, Steinhaeuser D, Selbig J, Walther D, Weckwerth W (2007)
ProMEX: a mass spectral reference database for proteins and protein phophorylation sites.
BMC Bioinformatics 8: 216.
Stacklies W, Redestig H, Scholz M, Walther D, Selbig J (2007)
pcaMethods- a Bioconductor package providing PCA methods for incomplete data.
Bioinformatics. 23: 1164-1167.
Steinfath, M., Repsilber, D., Scholz, M., Walther, D., Selbig, J. (2007)
Integrated data analysis for genome-wide research. In "Plant Systems Biology", Eds. S. Baginsky & A. Fernie, Birkhauser, Basel p309-329
Walther D, Brunnemann R, Selbig J (2007)
The regulatory code for transciptional response diversity and its relation to genome structural properties in Arabidopsis thaliana.
PLoS Genetics. 3(2): e11
Mehra MR, Uber PA, Walther D, Vesely M, Wohlgemuth JG, Prentice J, Tajama D, Billingham M (2006)
Gene expression profiles and B-type Natriuretic Peptide elevation in heart transplantation: More than a hemodynamic marker.
Circulation 114: I-21 - I-26
Starling R, Deng M, Kobashigawa J, Walther D, Wohlgemuth J, Rosenberg S, Mehra M (2006)
The influence of corticosteroids on the alloimmune molecular signature for cardiac allograft rejection.
J Heart Lung Transpl 24: S65-S66
Deng MC, Eisen HJ, Mehra MR, Billingham M, Marboe CC, Berry G, Kobashigawa J, Johnson FL, Starling RC, Murali S, Pauly DF, Baron H, Wohlgemuth JG, Woodward RN, Klingler TM, Walther D, Lal PG, Rosenberg S, Hunt S (2006)
Noninvasive Discrimination of Rejection in Cardiac Allograft Recipients Using Gene Expression Profiling.
Am J Transplant 6: 150-160
Jin P, Walther D, Zhang J, Rowe-Teeter C, Fu G (2004)
Identification of a conserved residue in GABAA receptor gamma2 subunit that mediates subunit-subunit interaction and cell surface lacalization.
J Biol Chem 279: 14179 - 14183
Gabdoulline RR, Wade RC, Walther D (2003)
MolSurfer: a macromolecular interface navigator.
Nucleic Acid Research. 31: 3349-3351
Meyer AS, Gillespie JR, Walther D, Millet IS, Doniach S, Frydman J (2003)
Closing Folding Chamber in the Eukaryotic Chaperonine requires the Transition State of ATP Hydrolysis.
Cell. 113: 369-381
Walther D, Bartha G, Morris M (2001)
Basecalling with LifeTrace.
Genome Research. 11: 875-888
Walther D, Cohen FE, Doniach S (2000)
Reconstruction of low resolution three-dimensional density maps
from one-dimensional Small Angle X-ray Scattering data
for biomolecules.
J. Applied Crystallography. 33: 350-363
Supplementary material
Bada M, Walther D, Arcangioli B, Doniach S, Delarue M. (2000)
Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein.
J Mol Biol.14: 563-574
Goh CS, Bogan AA, Joachimiak M, Walther D, Cohen FE (2000)
Co-evolution of proteins with their interaction partners.
J Mol Biol 299: 283-293
Walther D. and Cohen F.E. (1999)
Conformational attractors on the Ramachandran map.
Acta Cryst. D55: 506-517
Supplementary material
Gabdoulline RR, Wade RC, Walther D (1999)
MolSurfer: two-dimensional maps for navigating three-dimensional structures of proteins.
Trends Biochem Sci. 24: 285-287
Walther D, Springer C, Cohen FE (1998)
Helix-helix packing angle preferences for finite helix axes.
Proteins: Struct. Funct. Gen. 33: 457-459
Walther D. (1997)
WebMol - a Java based PDB viewer.
Trends Biochem Sci, 22: 274-275
Scott MR, Safar J, Telling G, Nguyen O, Groth D, Torchia M, Koehler R, Trembley P, Walther D, Cohen FE, DeArmone S, Prusiner SB (1997)
Identification of a prion protein epitope modulating transmission of bovine spongiform encephalopathy prions to transgenic mice.
PNAS 94:14279-14284
Pascual J, Pfuhl M,
Walther D, Saraste M,
Nilges M (1997)
Solution structure of the spectrin repeat: a left-handed antiparallel triple-helical
coiled-coil.
J Mol Biol. 273: 740-751
Donath E, Walther D, Shilov VN, Knippel E, Budde A,
Lowack K, Helm CA, Mohwald H (1997)
The nonlinear hairy layer theory of electrophorectic fingerprinting applied to
consecutive layer by layer polyelectrolyte adsorption onto charged polystyrene latex particles.
Langmuir. 13: 5249-5305
Walther D. and Argos P. (1996)
Intrahelical side chain - side chain contacts, the consequences of restricted rotameric states and the implications for helix engineering and design.
Protein Engineering, 9: 471-478
Abstract
Walther D., Kuzmin P., and Donath E. (1996)
Brownian dynamics simulation of the lateral distribution of charged membrane components.
Europ Bioph J 24: 125-135
Abstract
Walther D.,
Eisenhaber F., and Argos P. (1996)
Principles of helix-helix packing in proteins: The helical lattice superposition model.
J Mol Biol 255: 536-553
Abstract,
Full Article from JMB online
Donath E., Walther D., Krabi A., Allan G.C., and Vincent B. (1996)
A new relaxation effect with polymer depletion layers.
Langmuir, 12: 6263-6269
Juffer, A.,
Eisenhaber, F.,
Hubbard, S.,
Walther D and Argos P (1995)
Comparison of atomic solvation parametric sets: Applicability and limitations in protein folding and design.
Protein Sci 4: 2499-2509
Arakeljan VB, Walther D, Donath E (1993)
Electric potential around discrete charges in a dielectric membrane - electrolyte solution system.
Colloid Polym Sci 270: 268-276
Abstract,
Illustrative example
Walther D, Kuzmin P, Donath E (1993)
Brownian dynamics simulation of charged membrane components: Implication for their lateral distribution and voltage dependence of ion transport through membranes.
In: Modern Trends in Biothermokinetics. Schuster, S. (ed). Plenum Press, New York
(Conference Proceedings)