Image Gallery
 1crn; display of buried residues and their vdW 
surface:

<Select>->choose <buried> under <All AA>
choose-><Surface>-><vdW>
2utg; internal cavity:

<Surface>-><Cavity>
dots correspond to the solvent accessible surface;
<AllAt>-><MainCh> to display the mainchain only.
 
1zta; Ensemble of 20-NMR structures

Calculate average with <Average>.
2mhr; packing between secondary structural 
elements (helices in this case)

<Msure>-><Pack>, Magenta lines correspond
to hydrophobic moment vectors; color code according
to secondary structure type; broken lines are the lines
of closest approach; angular measurements describing
the packing are listed under [?].
2mhr; color code according to sequence conservation,
residues with thick lines are 100% conserved

<Color>-><HSSP>-> enter hssp-file ->;
<Select>-><All AA>-><Conserved>-> choose 
<SC vs. SC>-><Apply>.
1ppt; intra-protein van der Waals packing

<Select>->drag mouse over desired sequence
regions; choose color -> <Apply>;
<Surface>-><vdW>.
1crn; Distance matrix plot; lower triangle shows
dots for mainchain-mainchain hydrogen bonded
residues

<DMat>; Rectangle (drag mouse) chooses residues 
to be highlighted in the structure with chosen color.
1crn; Ramachandran plot

<Rama>; choose residues by dragging the mouse
of selected regions of the map; color choice in the
structure will be adopted in the Ramachandran plot 
(sequence conservation in this case, selected Gly (click
on it, becomes highlighted in the structure) has red color indicating conservation, the REASON?
Most likely: essentially only Gly can adopt positive phi-angles).
1ppt; mainchain-mainchain hydrogen bonds
and peptide bonds deviating more than some
degree from planarity

<Msure>-><HBond>;
<Msure>-><omega>
1oel; color-coding according to B-factor

<Color>-><Bfact>