WebMol Example


Launch WebMol in an html-page with pre-selected residues highlighted.

Applet parameter tag "SearchString" anchors selected residues by a search string. Amino acids in upper case will be highlighted, amino acid in lower case provide the flanking segment to pinpoint the location. Multiple search strings separated by '|' (vertical line character) can be passed to WebMol at once.

The html-page can be located on any server, in one of your html-pages, for example. WebMol will still get loaded from UCSF as defined in the 'codebase' parameter.

html-code for example below:


<html><body>
<applet code="proteinViewer.class" codebase="http://www.cmpharm.ucsf.edu/~walther/webmol/"
  width=700 height=600>
<PARAM NAME="PROTEIN" VALUE="1crn">
<PARAM NAME="PDB_STRING" VALUE="">
<PARAM NAME="PATH" VALUE="">
<PARAM NAME="URL" VALUE="http://www.cmpharm.ucsf.edu/~walther/webmol/pdb/">
<PARAM NAME="EXT" VALUE="ent">
<PARAM NAME="SearchString" VALUE="varSnfnvcrl|C|lpgtPEaicaty">
</applet>
</body> </html>